The pathology-free tumor map
All 14,118 tumor samples plotted by their 50-dimensional pathway state, reduced to 2D by PCA. PC1 explains 0.0%; PC2 explains 0.0% of the pathway-state variance.
Next steps
Compare entropy per cancer type to see which cohorts have narrow vs chaotic pathway profiles. Use the joint pharma-tumor co-embedding to overlay the 92 drugs on this same space.