SRR6013500
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.620
- MYC_TARGETS_V1+0.560
- MTORC1_SIGNALING+0.540
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.540
- OXIDATIVE_PHOSPHORYLATION+0.520
- E2F_TARGETS+0.500
- ALLOGRAFT_REJECTION+0.490
- INFLAMMATORY_RESPONSE+0.460
- IL6_JAK_STAT3_SIGNALING+0.450
- GLYCOLYSIS+0.440
Top 10 suppressed
- UV_RESPONSE_DN-0.300
- WNT_BETA_CATENIN_SIGNALING-0.280
- HEDGEHOG_SIGNALING-0.240
- NOTCH_SIGNALING-0.230
- KRAS_SIGNALING_DN-0.160
- MYOGENESIS-0.080
- SPERMATOGENESIS-0.050
- TGF_BETA_SIGNALING+0.050
- BILE_ACID_METABOLISM+0.060
- MITOTIC_SPINDLE+0.110
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR6013499 | — | cohortA1 | 0.995 |
| 2 | 27875588-7C41-49BB-A4C0-A66D72A12499 | — | — | 0.925 |
| 3 | SRR8942975 | — | — | 0.918 |
| 4 | SRR6013600 | — | cohortA1 | 0.908 |
| 5 | TCGA-66-2765-01A-01R-0851-07 | — | cohortSQ1 | 0.907 |
| 6 | 8f1213be-da41-4cd6-97b2-f9fce1ea00ff | — | — | 0.906 |
| 7 | MDT-AP-0368 | Med | Medulloblastoma | 0.905 |
| 8 | D06FFD0C-80D4-413D-9C83-62D9C163EDAB | — | — | 0.904 |
| 9 | SRR10900566 | — | — | 0.902 |
| 10 | B9535625-504A-4FCD-B341-2985AE72508A | — | — | 0.902 |