80cb0e05-387d-4bd8-b49c-ff2aae043982
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- age_years
- 67
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INFLAMMATORY_RESPONSE+0.530
- ALLOGRAFT_REJECTION+0.510
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.490
- HEDGEHOG_SIGNALING+0.490
- INTERFERON_GAMMA_RESPONSE+0.490
- INTERFERON_ALPHA_RESPONSE+0.480
- ANGIOGENESIS+0.470
- IL6_JAK_STAT3_SIGNALING+0.460
- TNFA_SIGNALING_VIA_NFKB+0.460
- UV_RESPONSE_DN+0.450
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.580
- MYC_TARGETS_V2-0.570
- E2F_TARGETS-0.520
- MYC_TARGETS_V1-0.470
- DNA_REPAIR-0.460
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.420
- G2M_CHECKPOINT-0.400
- CHOLESTEROL_HOMEOSTASIS-0.380
- MTORC1_SIGNALING-0.380
- UNFOLDED_PROTEIN_RESPONSE-0.370
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | c277dab0-361f-4aa6-96b1-522a6e556ae1 | — | — | 0.954 |
| 2 | 2cec663c-00c8-48b5-967b-f2a53c0fb409 | — | — | 0.950 |
| 3 | ec054d40-e5b8-496a-8c99-5e7f88f2cf37 | — | — | 0.949 |
| 4 | TCGA-CR-7376-01A-11R-2132-07 | — | — | 0.948 |
| 5 | C3N-02923 | — | cohortMD2 | 0.932 |
| 6 | 67ed15bc-bbe5-4da7-81f9-002c54483f67 | — | — | 0.931 |
| 7 | TCGA-A2-A25A-01A-12R-A16F-07 | — | A | 0.927 |
| 8 | a307b24f-4caa-403a-8313-2a4604f2079a | — | — | 0.927 |
| 9 | f22cfa82-a346-4fed-bc81-21a29bf990ee | — | — | 0.926 |
| 10 | 6dfa748c-af43-469f-a98b-8472a4132739 | — | — | 0.926 |