b4f1e5a5-061a-498b-aadc-bd568f0e4f87
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.400
- ANGIOGENESIS+0.300
- UV_RESPONSE_DN+0.300
- NOTCH_SIGNALING+0.200
- TGF_BETA_SIGNALING+0.200
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.100
- HEDGEHOG_SIGNALING+0.100
- UNFOLDED_PROTEIN_RESPONSE+0.100
- WNT_BETA_CATENIN_SIGNALING+0.100
- ANDROGEN_RESPONSE+0.000
Top 10 suppressed
- E2F_TARGETS-0.500
- ALLOGRAFT_REJECTION-0.400
- G2M_CHECKPOINT-0.400
- INTERFERON_ALPHA_RESPONSE-0.400
- INTERFERON_GAMMA_RESPONSE-0.400
- MYC_TARGETS_V2-0.400
- OXIDATIVE_PHOSPHORYLATION-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.400
- COMPLEMENT-0.300
- DNA_REPAIR-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | fe036511-fe82-467c-9c6e-59bfb8b0a329 | — | — | 0.857 |
| 2 | TCGA-78-7161-01A-11R-2039-07 | — | cohortA3 | 0.850 |
| 3 | C3L-02165 | — | cohortA2 | 0.833 |
| 4 | SRR10900003 | — | — | 0.827 |
| 5 | BSR_08_0188_C3_S52 | — | A | 0.824 |
| 6 | TCGA-BH-A0EI-01A-11R-A115-07 | — | B | 0.820 |
| 7 | TCGA-AO-A12C-01A-11R-A10J-07 | — | A | 0.815 |
| 8 | C3L-03463 | — | cohortA3 | 0.814 |
| 9 | SRR8518225 | — | B | 0.812 |
| 10 | e3d71c3f-4e56-45fa-be88-2cf444b70a5c | — | — | 0.809 |