MDT-AP-0592
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 51
- os_event
- false
- age_years
- 7
- sex
- M
- new_clusters
- S2
- umap1_2d
- -0.657248168
- umap2_2d
- -8.797555197
- umap1_3d
- -3.773682018
- umap2_3d
- -1.668158008
- umap3_3d
- 6.817317982
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MITOTIC_SPINDLE+0.350
- APICAL_SURFACE+0.340
- CHOLESTEROL_HOMEOSTASIS+0.340
- WNT_BETA_CATENIN_SIGNALING+0.310
- MTORC1_SIGNALING+0.300
- PANCREAS_BETA_CELLS+0.290
- HEDGEHOG_SIGNALING+0.280
- NOTCH_SIGNALING+0.260
- GLYCOLYSIS+0.230
- UNFOLDED_PROTEIN_RESPONSE+0.230
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.430
- INTERFERON_GAMMA_RESPONSE-0.410
- ALLOGRAFT_REJECTION-0.390
- INFLAMMATORY_RESPONSE-0.320
- IL6_JAK_STAT3_SIGNALING-0.290
- KRAS_SIGNALING_UP-0.270
- COMPLEMENT-0.230
- COAGULATION-0.210
- TNFA_SIGNALING_VIA_NFKB-0.210
- P53_PATHWAY-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-0007 | Med | Medulloblastoma | 0.815 |
| 2 | TCGA-92-7341-01A-31R-2045-07 | — | cohortSQ2 | 0.803 |
| 3 | SRR1313118 | — | B | 0.800 |
| 4 | TCGA-85-6798-01A-11R-1949-07 | — | cohortSQ2 | 0.793 |
| 5 | TCGA-BH-A0HY-01A-11R-A056-07 | — | C | 0.788 |
| 6 | TCGA-51-4081-01A-01R-1100-07 | — | cohortSQ2 | 0.778 |
| 7 | TCGA-C8-A12Z-01A-11R-A115-07 | — | C | 0.777 |
| 8 | TCGA-94-A5I6-01A-21R-A27Q-07 | — | cohortSQ2 | 0.762 |
| 9 | BS_WGK8ZMVA | Supratentorial Ependymoma | — | 0.761 |
| 10 | TCGA-43-7657-01A-31R-2125-07 | — | cohortSQ1 | 0.755 |