MBCProject_0734_T1B_RNA
— · C
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- C
- subtype
- C
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.600
- INTERFERON_GAMMA_RESPONSE+0.460
- MTORC1_SIGNALING+0.450
- INFLAMMATORY_RESPONSE+0.440
- PROTEIN_SECRETION+0.430
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.420
- ANGIOGENESIS+0.380
- CHOLESTEROL_HOMEOSTASIS+0.330
- TNFA_SIGNALING_VIA_NFKB+0.330
- COMPLEMENT+0.320
Top 10 suppressed
- WNT_BETA_CATENIN_SIGNALING-0.310
- BILE_ACID_METABOLISM-0.260
- UV_RESPONSE_DN-0.100
- NOTCH_SIGNALING-0.090
- MYOGENESIS-0.070
- PEROXISOME-0.060
- HEME_METABOLISM-0.030
- FATTY_ACID_METABOLISM-0.020
- ADIPOGENESIS-0.010
- MITOTIC_SPINDLE+0.030
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MBCProject_0734_T1K_RNA | — | C | 0.909 |
| 2 | TCGA-ZF-AA53-01A-11R-A39I-07 | — | — | 0.903 |
| 3 | SRR10900560 | — | — | 0.883 |
| 4 | SRR29022839 | — | A | 0.878 |
| 5 | DRR168574 | — | — | 0.878 |
| 6 | TCGA-BH-A0DZ-01A-11R-A00Z-07 | — | C | 0.875 |
| 7 | ERR2208974 | — | — | 0.871 |
| 8 | AE47BCDE-A2D2-43EF-8EC7-78E4D1817EEE | — | — | 0.869 |
| 9 | SRR6013494 | — | cohortA1 | 0.857 |
| 10 | SRR1516055 | — | — | 0.857 |