SRR1355613
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.443
- COAGULATION+0.377
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.367
- MYOGENESIS+0.340
- INTERFERON_ALPHA_RESPONSE+0.312
- WNT_BETA_CATENIN_SIGNALING+0.241
- INFLAMMATORY_RESPONSE+0.233
- PANCREAS_BETA_CELLS+0.197
- ESTROGEN_RESPONSE_EARLY+0.196
- ESTROGEN_RESPONSE_LATE+0.190
Top 10 suppressed
- MYC_TARGETS_V1-0.667
- OXIDATIVE_PHOSPHORYLATION-0.569
- DNA_REPAIR-0.554
- UNFOLDED_PROTEIN_RESPONSE-0.529
- PROTEIN_SECRETION-0.523
- MTORC1_SIGNALING-0.518
- MYC_TARGETS_V2-0.500
- CHOLESTEROL_HOMEOSTASIS-0.449
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.442
- PI3K_AKT_MTOR_SIGNALING-0.418
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1343281 | GTEX | — | 0.975 |
| 2 | SRR1456333 | GTEX | — | 0.965 |
| 3 | SRR1330061 | GTEX | — | 0.957 |
| 4 | SRR819793 | GTEX | — | 0.955 |
| 5 | SRR1332856 | GTEX | — | 0.950 |
| 6 | SRR1444559 | GTEX | — | 0.947 |
| 7 | SRR820292 | GTEX | — | 0.945 |
| 8 | SRR1489155 | GTEX | — | 0.944 |
| 9 | SRR1390582 | GTEX | — | 0.944 |
| 10 | SRR1339530 | GTEX | — | 0.944 |