SAMN03290896
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.400
- E2F_TARGETS+0.300
- G2M_CHECKPOINT+0.300
- ANGIOGENESIS+0.200
- MYC_TARGETS_V1+0.200
- PANCREAS_BETA_CELLS+0.100
- UNFOLDED_PROTEIN_RESPONSE+0.100
- WNT_BETA_CATENIN_SIGNALING+0.100
- DNA_REPAIR+0.000
- MITOTIC_SPINDLE+0.000
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.600
- INTERFERON_ALPHA_RESPONSE-0.600
- INTERFERON_GAMMA_RESPONSE-0.600
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.500
- TNFA_SIGNALING_VIA_NFKB-0.500
- APICAL_SURFACE-0.400
- APOPTOSIS-0.400
- CHOLESTEROL_HOMEOSTASIS-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
7 twins match this tumor's tissue · 3 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SAMN03290918 | — | — | 0.948 |
| 2 | b2e80b2b-559c-424e-837d-fa1de6b912e7 | — | — | 0.921 |
| 3 | BS_YEB88D32 | medulloblastoma | — | 0.910 |
| 4 | BS_9PB3XH5D | medulloblastoma | — | 0.909 |
| 5 | TCGA-XF-AAMG-01A-11R-A42T-07 | — | — | 0.906 |
| 6 | ERR2208946 | — | — | 0.904 |
| 7 | bbba6e8b-9e37-45e0-b663-f81631e76828 | — | — | 0.903 |
| 8 | 065d8d7a-c241-4a24-8f77-2cb5a4341f35 | — | — | 0.902 |
| 9 | BS_VAAHBH60 | Supratentorial Ependymoma | — | 0.901 |
| 10 | SRR975552 | — | — | 0.901 |