TCGA-83-5908-01A-21R-2287-07
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
- age_years
- 59
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.670
- INTERFERON_GAMMA_RESPONSE+0.600
- E2F_TARGETS+0.590
- G2M_CHECKPOINT+0.570
- MITOTIC_SPINDLE+0.520
- ALLOGRAFT_REJECTION+0.500
- TNFA_SIGNALING_VIA_NFKB+0.430
- MYC_TARGETS_V2+0.420
- MYC_TARGETS_V1+0.410
- PI3K_AKT_MTOR_SIGNALING+0.360
Top 10 suppressed
- KRAS_SIGNALING_DN-0.420
- PANCREAS_BETA_CELLS-0.370
- MYOGENESIS-0.360
- FATTY_ACID_METABOLISM-0.340
- BILE_ACID_METABOLISM-0.300
- OXIDATIVE_PHOSPHORYLATION-0.260
- PEROXISOME-0.260
- CHOLESTEROL_HOMEOSTASIS-0.240
- XENOBIOTIC_METABOLISM-0.230
- ADIPOGENESIS-0.220
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-CR-7373-01A-11R-2016-07 | — | — | 0.913 |
| 2 | MNG1210 | — | — | 0.910 |
| 3 | SRR934780 | — | — | 0.908 |
| 4 | C3N-03093 | — | cohortA1 | 0.893 |
| 5 | TCGA-55-8205-01A-11R-2241-07 | — | cohortA1 | 0.892 |
| 6 | TCGA-BT-A3PJ-01A-21R-A220-07 | — | — | 0.883 |
| 7 | TCGA-77-A5GH-01A-11R-A27Q-07 | — | cohortSQ1 | 0.862 |
| 8 | 3F932445-1D8F-4128-A8DA-F36EA9F6E745 | — | — | 0.862 |
| 9 | 33233781-A799-4610-86FC-C836713D31AA | — | — | 0.855 |
| 10 | TCGA-G2-A2EF-01A-12R-A18C-07 | — | — | 0.852 |