BS_BPWEFR89
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 58.32000000000001
- os_event
- true
- age_years
- 10.896
- sex
- F
- race
- White
- new_clusters
- S1
- umap1_2d
- -0.967982369
- umap2_2d
- -10.33913848
- umap1_3d
- -3.629953947
- umap2_3d
- -0.818947919
- umap3_3d
- 6.453531189
- dataset
- Med-CBTN
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.420
- PANCREAS_BETA_CELLS+0.390
- INTERFERON_ALPHA_RESPONSE+0.360
- UV_RESPONSE_DN+0.360
- TNFA_SIGNALING_VIA_NFKB+0.340
- HYPOXIA+0.320
- NOTCH_SIGNALING+0.300
- CHOLESTEROL_HOMEOSTASIS+0.270
- WNT_BETA_CATENIN_SIGNALING+0.270
- APICAL_SURFACE+0.260
Top 10 suppressed
- G2M_CHECKPOINT-0.170
- SPERMATOGENESIS-0.160
- PROTEIN_SECRETION-0.140
- DNA_REPAIR-0.110
- HEME_METABOLISM-0.110
- PEROXISOME-0.100
- E2F_TARGETS-0.060
- ANGIOGENESIS-0.040
- PI3K_AKT_MTOR_SIGNALING-0.040
- TGF_BETA_SIGNALING-0.010
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_1QXEC43H | Med | Medulloblastoma | 0.889 |
| 2 | MDT-AP-0815 | Med | Medulloblastoma | 0.783 |
| 3 | BS_4T0HPZDC | Posterior Fossa Ependymoma | — | 0.763 |
| 4 | MDT-AP-2910 | Med | Medulloblastoma | 0.759 |
| 5 | SJEPD001508_D1.RNA-Seq | EPN | Posterior Fossa EPN | 0.758 |
| 6 | MDT-AP-0827 | Med | Medulloblastoma | 0.753 |
| 7 | SJEPD001509_D1.RNA-Seq | EPN | Supratentorial EPN | 0.752 |
| 8 | MNG1155 | — | — | 0.749 |
| 9 | SRR8518423 | — | C | 0.747 |
| 10 | BS_ZVZDDW2G | pleomorphic xanthoastrocytoma(PXA) | — | 0.746 |