TCGA-22-5473-01A-01R-1635-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 78
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.540
- MYC_TARGETS_V1+0.530
- E2F_TARGETS+0.490
- MTORC1_SIGNALING+0.490
- OXIDATIVE_PHOSPHORYLATION+0.440
- G2M_CHECKPOINT+0.430
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.390
- GLYCOLYSIS+0.380
- HEDGEHOG_SIGNALING+0.370
- UNFOLDED_PROTEIN_RESPONSE+0.370
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.290
- INTERFERON_ALPHA_RESPONSE-0.270
- INTERFERON_GAMMA_RESPONSE-0.270
- INFLAMMATORY_RESPONSE-0.250
- COMPLEMENT-0.240
- IL6_JAK_STAT3_SIGNALING-0.220
- KRAS_SIGNALING_UP-0.220
- ANGIOGENESIS-0.210
- TNFA_SIGNALING_VIA_NFKB-0.170
- COAGULATION-0.130
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-68-7755-01A-11R-2125-07 | — | cohortSQ2 | 0.904 |
| 2 | TCGA-90-7769-01A-11R-2125-07 | — | cohortSQ2 | 0.896 |
| 3 | TCGA-92-7341-01A-31R-2045-07 | — | cohortSQ2 | 0.896 |
| 4 | TCGA-33-4586-01A-01R-1443-07 | — | cohortSQ2 | 0.890 |
| 5 | TCGA-21-1077-01A-01R-0692-07 | — | cohortSQ2 | 0.886 |
| 6 | TCGA-77-7140-01A-41R-2045-07 | — | cohortSQ2 | 0.874 |
| 7 | MDT-AP-0322 | Med | Medulloblastoma | 0.871 |
| 8 | TCGA-43-A474-01A-11R-A24H-07 | — | cohortSQ2 | 0.864 |
| 9 | TCGA-22-5485-01A-01R-1635-07 | — | cohortSQ2 | 0.859 |
| 10 | TCGA-66-2783-01A-01R-1201-07 | — | cohortSQ2 | 0.856 |