DRR168604
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.450
- KRAS_SIGNALING_UP+0.430
- TNFA_SIGNALING_VIA_NFKB+0.430
- ALLOGRAFT_REJECTION+0.390
- HEDGEHOG_SIGNALING+0.390
- INFLAMMATORY_RESPONSE+0.380
- UV_RESPONSE_DN+0.370
- IL2_STAT5_SIGNALING+0.350
- COMPLEMENT+0.340
- IL6_JAK_STAT3_SIGNALING+0.330
Top 10 suppressed
- E2F_TARGETS-0.540
- DNA_REPAIR-0.460
- G2M_CHECKPOINT-0.440
- MYC_TARGETS_V2-0.380
- MYC_TARGETS_V1-0.330
- MITOTIC_SPINDLE-0.310
- GLYCOLYSIS-0.290
- UNFOLDED_PROTEIN_RESPONSE-0.250
- OXIDATIVE_PHOSPHORYLATION-0.240
- PI3K_AKT_MTOR_SIGNALING-0.220
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-38-7271-01A-11R-2039-07 | — | cohortMD2 | 0.920 |
| 2 | SRR35579817 | — | A | 0.918 |
| 3 | TCGA-49-6744-01A-11R-1858-07 | — | cohortA1 | 0.918 |
| 4 | TCGA-55-8091-01A-11R-2241-07 | — | cohortA1 | 0.916 |
| 5 | TCGA-38-4626-01A-01R-1206-07 | — | cohortMD2 | 0.915 |
| 6 | TCGA-A2-A0EN-01A-13R-A084-07 | — | A | 0.915 |
| 7 | GSM5359443 | — | — | 0.913 |
| 8 | 2eaa09cd-8e3e-4de9-ab96-7a290d780a01 | — | — | 0.912 |
| 9 | MDT-AP-2743 | Med | Medulloblastoma | 0.907 |
| 10 | SRR1797302 | — | cohortMD2 | 0.904 |