SRR1475609
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_GAMMA_RESPONSE+0.392
- INTERFERON_ALPHA_RESPONSE+0.388
- ALLOGRAFT_REJECTION+0.385
- IL6_JAK_STAT3_SIGNALING+0.298
- INFLAMMATORY_RESPONSE+0.267
- CHOLESTEROL_HOMEOSTASIS+0.257
- IL2_STAT5_SIGNALING+0.223
- COMPLEMENT+0.194
- TGF_BETA_SIGNALING+0.183
- BILE_ACID_METABOLISM+0.175
Top 10 suppressed
- HEDGEHOG_SIGNALING-0.531
- OXIDATIVE_PHOSPHORYLATION-0.339
- NOTCH_SIGNALING-0.262
- UV_RESPONSE_DN-0.256
- MYC_TARGETS_V2-0.248
- UNFOLDED_PROTEIN_RESPONSE-0.228
- SPERMATOGENESIS-0.216
- PANCREAS_BETA_CELLS-0.199
- ADIPOGENESIS-0.163
- HYPOXIA-0.153
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1323603 | GTEX | — | 0.899 |
| 2 | SRR1429244 | GTEX | — | 0.898 |
| 3 | SRR1488172 | GTEX | — | 0.895 |
| 4 | SRR1362777 | GTEX | — | 0.882 |
| 5 | SRR1323807 | GTEX | — | 0.873 |
| 6 | SRR599486 | GTEX | — | 0.861 |
| 7 | SRR612311 | GTEX | — | 0.853 |
| 8 | SRR1419893 | GTEX | — | 0.852 |
| 9 | SRR1073755 | GTEX | — | 0.843 |
| 10 | SRR1402840 | GTEX | — | 0.842 |