SRR13780247
— · cohortMD1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortMD1
- subtype
- cohortMD1
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.580
- G2M_CHECKPOINT+0.570
- MYC_TARGETS_V1+0.500
- MYC_TARGETS_V2+0.410
- DNA_REPAIR+0.370
- UNFOLDED_PROTEIN_RESPONSE+0.330
- OXIDATIVE_PHOSPHORYLATION+0.300
- WNT_BETA_CATENIN_SIGNALING+0.230
- MTORC1_SIGNALING+0.200
- MITOTIC_SPINDLE+0.170
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.540
- INFLAMMATORY_RESPONSE-0.540
- INTERFERON_GAMMA_RESPONSE-0.530
- ALLOGRAFT_REJECTION-0.510
- IL6_JAK_STAT3_SIGNALING-0.510
- TNFA_SIGNALING_VIA_NFKB-0.490
- COAGULATION-0.470
- COMPLEMENT-0.470
- INTERFERON_ALPHA_RESPONSE-0.470
- IL2_STAT5_SIGNALING-0.410
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
5 twins match this tumor's tissue · 5 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_1HQ76V6D | Embryonal tumors | — | 0.954 |
| 2 | TCGA-78-7155-01A-11R-2039-07 | — | cohortMD1 | 0.948 |
| 3 | BS_N6N147BY | Embryonal tumors | — | 0.948 |
| 4 | TCGA-66-2793-01A-01R-1201-07 | — | cohortMD1 | 0.946 |
| 5 | TCGA-NC-A5HH-01A-11R-A26W-07 | — | cohortMD1 | 0.944 |
| 6 | BS_JFB984RG | medulloblastoma | — | 0.940 |
| 7 | BS_K25F4J3V | ATRT | — | 0.939 |
| 8 | TCGA-A1-A0SO-01A-22R-A084-07 | — | E | 0.938 |
| 9 | ERR2598206 | fetal | fetal | 0.936 |
| 10 | C3L-04013 | — | cohortMD1 | 0.935 |