TCGA-BA-A6DE-01A-22R-A31N-07
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.350
- INTERFERON_ALPHA_RESPONSE+0.300
- PANCREAS_BETA_CELLS+0.190
- SPERMATOGENESIS+0.190
- G2M_CHECKPOINT+0.170
- KRAS_SIGNALING_DN+0.140
- MYC_TARGETS_V1+0.140
- PROTEIN_SECRETION+0.120
- MITOTIC_SPINDLE+0.100
- CHOLESTEROL_HOMEOSTASIS+0.090
Top 10 suppressed
- NOTCH_SIGNALING-0.410
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.400
- UV_RESPONSE_DN-0.330
- ALLOGRAFT_REJECTION-0.310
- HEDGEHOG_SIGNALING-0.310
- HYPOXIA-0.310
- IL2_STAT5_SIGNALING-0.290
- APICAL_JUNCTION-0.280
- COAGULATION-0.270
- COMPLEMENT-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-CX-7086-01A-11R-2081-07 | — | — | 0.837 |
| 2 | 20130300.LumB | — | B | 0.813 |
| 3 | SRR8518294 | — | E | 0.803 |
| 4 | SRR26320089 | — | — | 0.801 |
| 5 | TCGA-GV-A3QH-01A-11R-A220-07 | — | — | 0.791 |
| 6 | TCGA-C8-A1HO-01A-11R-A13Q-07 | — | B | 0.783 |
| 7 | SRR1516061 | — | — | 0.773 |
| 8 | TCGA-A2-A0ET-01A-31R-A034-07 | — | B | 0.764 |
| 9 | SRR25617851 | — | B | 0.760 |
| 10 | SRR8526725 | — | cohortSQ2 | 0.747 |