BS_QSTAVWGE
EPN · EPN Tumor
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- EPN Tumor
- cancer_type
- EPN
- subtype
- EPN Tumor
- overall_survival_months
- 140.88
- os_event
- false
- age_years
- 8.611
- e1_e2
- E2
- umap1_2d
- -8.61862472
- umap2_2d
- 0.215599186
- umap1_3d
- 0.206904671
- umap2_3d
- 2.863402507
- umap3_3d
- 2.541657931
- dataset
- EPN-CBTN
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.370
- ANGIOGENESIS+0.350
- P53_PATHWAY+0.270
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.270
- HYPOXIA+0.260
- NOTCH_SIGNALING+0.250
- KRAS_SIGNALING_DN+0.240
- COAGULATION+0.230
- WNT_BETA_CATENIN_SIGNALING+0.230
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.220
Top 10 suppressed
- G2M_CHECKPOINT-0.410
- E2F_TARGETS-0.360
- MITOTIC_SPINDLE-0.330
- MYC_TARGETS_V1-0.320
- UV_RESPONSE_UP-0.220
- MTORC1_SIGNALING-0.210
- CHOLESTEROL_HOMEOSTASIS-0.170
- KRAS_SIGNALING_UP-0.170
- ANDROGEN_RESPONSE-0.130
- PROTEIN_SECRETION-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_QSTAVWGE | Spinal Cord Ependymoma | — | 0.873 |
| 2 | TCGA-E2-A1IF-01A-11R-A144-07 | — | A | 0.678 |
| 3 | TCGA-56-8622-01A-11R-2403-07 | — | cohortSQ1 | 0.674 |
| 4 | 1e82995c-f318-4225-96d4-f1e98bcbf60b | — | — | 0.670 |
| 5 | bb3dc2ff-a686-483e-8d3c-e06649462881 | — | — | 0.669 |
| 6 | TCGA-AC-A3QP-01A-11R-A22U-07 | — | B | 0.656 |
| 7 | MDT-AP-1336 | Med | Medulloblastoma | 0.654 |
| 8 | AUR-AER6-TTM6-A-1-1-R-A742-41 | — | C | 0.651 |
| 9 | TCGA-D8-A3Z6-01A-11R-A239-07 | — | A | 0.650 |
| 10 | d496ef4f-4716-4e6e-94e3-fce93b26d4ee | — | — | 0.648 |