SRR660103
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INFLAMMATORY_RESPONSE+0.389
- ANDROGEN_RESPONSE+0.362
- TNFA_SIGNALING_VIA_NFKB+0.344
- INTERFERON_GAMMA_RESPONSE+0.343
- INTERFERON_ALPHA_RESPONSE+0.339
- CHOLESTEROL_HOMEOSTASIS+0.316
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.310
- IL2_STAT5_SIGNALING+0.305
- KRAS_SIGNALING_UP+0.303
- IL6_JAK_STAT3_SIGNALING+0.287
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.560
- MYC_TARGETS_V2-0.515
- HEDGEHOG_SIGNALING-0.426
- DNA_REPAIR-0.412
- MYC_TARGETS_V1-0.330
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.287
- UNFOLDED_PROTEIN_RESPONSE-0.270
- PANCREAS_BETA_CELLS-0.241
- PI3K_AKT_MTOR_SIGNALING-0.208
- ADIPOGENESIS-0.205
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR661925 | GTEX | — | 0.910 |
| 2 | SRR1464411 | GTEX | — | 0.908 |
| 3 | SRR1323807 | GTEX | — | 0.886 |
| 4 | SRR1441701 | GTEX | — | 0.868 |
| 5 | SRR819534 | GTEX | — | 0.859 |
| 6 | SRR1093773 | GTEX | — | 0.847 |
| 7 | SRR1387989 | GTEX | — | 0.842 |
| 8 | SRR1079168 | GTEX | — | 0.838 |
| 9 | SRR665241 | GTEX | — | 0.836 |
| 10 | SRR1468403 | GTEX | — | 0.830 |