98e49cc4-1040-4291-b975-da3e8fc3ddfc
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_GAMMA_RESPONSE+0.700
- ALLOGRAFT_REJECTION+0.600
- IL6_JAK_STAT3_SIGNALING+0.600
- INTERFERON_ALPHA_RESPONSE+0.600
- INFLAMMATORY_RESPONSE+0.500
- COMPLEMENT+0.400
- IL2_STAT5_SIGNALING+0.400
- TNFA_SIGNALING_VIA_NFKB+0.400
- KRAS_SIGNALING_UP+0.300
- TGF_BETA_SIGNALING+0.200
Top 10 suppressed
- MYC_TARGETS_V2-0.700
- E2F_TARGETS-0.500
- MYC_TARGETS_V1-0.500
- OXIDATIVE_PHOSPHORYLATION-0.500
- ADIPOGENESIS-0.400
- DNA_REPAIR-0.400
- G2M_CHECKPOINT-0.400
- GLYCOLYSIS-0.400
- MTORC1_SIGNALING-0.300
- NOTCH_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-MP-A4TJ-01A-51R-A262-07 | — | cohortA1 | 0.925 |
| 2 | 2d12ea90-c4f4-4aca-b353-360057b446e2 | — | — | 0.916 |
| 3 | 94b2af92-0cfc-40b2-977d-6bd0fa4440d9 | — | — | 0.910 |
| 4 | DRR168552 | — | — | 0.904 |
| 5 | d24acd56-d148-487c-8d44-b303a68eb9d2 | — | — | 0.899 |
| 6 | BS_CS170P7T | pilocytic astrocytoma | — | 0.895 |
| 7 | SRR2932841 | — | — | 0.889 |
| 8 | TCGA-55-6971-01A-11R-1949-07 | — | cohortMD2 | 0.889 |
| 9 | 20030005.Her2HRpos | — | A | 0.888 |
| 10 | GSM5359418 | — | — | 0.883 |