SRR6079990
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.550
- MYC_TARGETS_V1+0.540
- G2M_CHECKPOINT+0.460
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.380
- MYC_TARGETS_V2+0.350
- OXIDATIVE_PHOSPHORYLATION+0.350
- PROTEIN_SECRETION+0.340
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.310
- DNA_REPAIR+0.300
- GLYCOLYSIS+0.280
Top 10 suppressed
- CHOLESTEROL_HOMEOSTASIS-0.390
- INTERFERON_ALPHA_RESPONSE-0.330
- ESTROGEN_RESPONSE_EARLY-0.320
- KRAS_SIGNALING_DN-0.300
- INTERFERON_GAMMA_RESPONSE-0.290
- WNT_BETA_CATENIN_SIGNALING-0.290
- ESTROGEN_RESPONSE_LATE-0.230
- ALLOGRAFT_REJECTION-0.200
- P53_PATHWAY-0.190
- MYOGENESIS-0.180
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R265 | — | — | 0.852 |
| 2 | SRR33532784 | — | A | 0.834 |
| 3 | HLF_LIVER | HCC | — | 0.821 |
| 4 | R318 | — | — | 0.812 |
| 5 | SRR4195653 | — | — | 0.804 |
| 6 | TCGA-CV-7429-01A-11R-2132-07 | — | — | 0.804 |
| 7 | SJEPD030367_D1.RNA-Seq | EPN | Anaplastic EPN | 0.794 |
| 8 | TCGA-21-1071-01A-01R-0692-07 | — | cohortSQ2 | 0.790 |
| 9 | c192c50f-0236-4d28-9343-ce9d9c3ac291 | — | — | 0.787 |
| 10 | MNG778 | — | — | 0.786 |