d93b1580-c20d-4611-ac99-c0cb33f37a45
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- COAGULATION+0.400
- ESTROGEN_RESPONSE_EARLY+0.400
- ESTROGEN_RESPONSE_LATE+0.400
- KRAS_SIGNALING_DN+0.400
- ANGIOGENESIS+0.300
- APICAL_JUNCTION+0.300
- APICAL_SURFACE+0.300
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.300
- MYOGENESIS+0.300
- XENOBIOTIC_METABOLISM+0.300
Top 10 suppressed
- E2F_TARGETS-0.600
- G2M_CHECKPOINT-0.600
- MYC_TARGETS_V1-0.600
- PROTEIN_SECRETION-0.600
- INTERFERON_ALPHA_RESPONSE-0.500
- MITOTIC_SPINDLE-0.500
- ANDROGEN_RESPONSE-0.400
- DNA_REPAIR-0.400
- INTERFERON_GAMMA_RESPONSE-0.400
- MTORC1_SIGNALING-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 60c210ff-d245-40d2-9de9-7b799cc3ffc9 | — | — | 0.900 |
| 2 | SRR1405485 | GTEX | — | 0.892 |
| 3 | TCGA-MP-A4TD-01A-32R-A262-07 | — | cohortA3 | 0.890 |
| 4 | R62 | — | — | 0.887 |
| 5 | R114 | — | — | 0.880 |
| 6 | SRR1315761 | GTEX | — | 0.868 |
| 7 | TCGA-KQ-A41P-01A-12R-A33J-07 | — | — | 0.867 |
| 8 | SRR1499193 | GTEX | — | 0.866 |
| 9 | 57583139-d2d3-4b97-a616-aa96058d4682 | — | — | 0.864 |
| 10 | SRR1437555 | GTEX | — | 0.863 |