SRR25617891
— · E
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- E
- subtype
- E
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.530
- TGF_BETA_SIGNALING+0.480
- ANGIOGENESIS+0.430
- NOTCH_SIGNALING+0.340
- PROTEIN_SECRETION+0.320
- G2M_CHECKPOINT+0.310
- HYPOXIA+0.310
- MTORC1_SIGNALING+0.310
- MYC_TARGETS_V1+0.310
- E2F_TARGETS+0.300
Top 10 suppressed
- PEROXISOME-0.300
- ALLOGRAFT_REJECTION-0.290
- ESTROGEN_RESPONSE_EARLY-0.270
- DNA_REPAIR-0.260
- PANCREAS_BETA_CELLS-0.180
- FATTY_ACID_METABOLISM-0.160
- ESTROGEN_RESPONSE_LATE-0.140
- KRAS_SIGNALING_DN-0.140
- COMPLEMENT-0.120
- IL6_JAK_STAT3_SIGNALING-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR25617936 | — | E | 0.809 |
| 2 | TCGA-55-6975-01A-11R-1949-07 | — | cohortA4 | 0.772 |
| 3 | MNG56 | — | — | 0.744 |
| 4 | TCGA-A7-A13D-01A-13R-A277-07 | — | E | 0.741 |
| 5 | TCGA-60-2703-01A-11R-2045-07 | — | cohortSQ1 | 0.734 |
| 6 | 5472fa65-a8e2-4593-abd8-e241d1bdec84 | — | — | 0.722 |
| 7 | 20110025.TNBC | — | E | 0.716 |
| 8 | TCGA-A7-A13D-01A-13R-A12P-07 | — | E | 0.711 |
| 9 | TCGA-BH-A0WA-01A-11R-A109-07 | — | E | 0.702 |
| 10 | SRR12696773 | — | — | 0.701 |