SRR1399092
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.411
- OXIDATIVE_PHOSPHORYLATION+0.381
- KRAS_SIGNALING_DN+0.350
- MYOGENESIS+0.339
- PANCREAS_BETA_CELLS+0.307
- ALLOGRAFT_REJECTION+0.304
- INTERFERON_ALPHA_RESPONSE+0.292
- FATTY_ACID_METABOLISM+0.286
- ESTROGEN_RESPONSE_LATE+0.256
- BILE_ACID_METABOLISM+0.234
Top 10 suppressed
- G2M_CHECKPOINT-0.490
- E2F_TARGETS-0.480
- MYC_TARGETS_V2-0.445
- UNFOLDED_PROTEIN_RESPONSE-0.396
- MITOTIC_SPINDLE-0.383
- MYC_TARGETS_V1-0.378
- DNA_REPAIR-0.325
- TGF_BETA_SIGNALING-0.282
- WNT_BETA_CATENIN_SIGNALING-0.268
- ANDROGEN_RESPONSE-0.265
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
5 twins match this tumor's tissue · 5 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1430570 | GTEX | — | 0.949 |
| 2 | SRR1328919 | GTEX | — | 0.906 |
| 3 | ERR2598329 | fetal | fetal | 0.897 |
| 4 | ERR2598267 | fetal | fetal | 0.892 |
| 5 | ERR2598280 | fetal | fetal | 0.891 |
| 6 | SRR1458180 | GTEX | — | 0.889 |
| 7 | ERR2598281 | fetal | fetal | 0.888 |
| 8 | SRR612623 | GTEX | — | 0.881 |
| 9 | ERR2598269 | fetal | fetal | 0.881 |
| 10 | SRR1080172 | GTEX | — | 0.881 |