SRR1516059
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.480
- INTERFERON_GAMMA_RESPONSE+0.480
- ALLOGRAFT_REJECTION+0.420
- G2M_CHECKPOINT+0.340
- IL6_JAK_STAT3_SIGNALING+0.330
- E2F_TARGETS+0.250
- MYC_TARGETS_V1+0.220
- MYC_TARGETS_V2+0.180
- INFLAMMATORY_RESPONSE+0.170
- PI3K_AKT_MTOR_SIGNALING+0.150
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.410
- ANGIOGENESIS-0.380
- HYPOXIA-0.360
- GLYCOLYSIS-0.340
- MYOGENESIS-0.260
- COAGULATION-0.240
- APICAL_SURFACE-0.230
- FATTY_ACID_METABOLISM-0.230
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.230
- P53_PATHWAY-0.220
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1516083 | — | — | 0.923 |
| 2 | SRR12475138 | — | — | 0.832 |
| 3 | SRR25043627 | — | — | 0.824 |
| 4 | SRR33532827 | — | D | 0.818 |
| 5 | SRR12202438 | — | — | 0.812 |
| 6 | SRR10900596 | — | — | 0.812 |
| 7 | MDT-AP-3248 | Med | Medulloblastoma | 0.810 |
| 8 | AUR-AFE5-TTP1-A-1-0-R-A741-41 | — | D | 0.808 |
| 9 | SRR8613734 | — | D | 0.805 |
| 10 | SRR8518162 | — | E | 0.799 |