SRR8518245
— · F
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- F
- subtype
- F
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.430
- FATTY_ACID_METABOLISM+0.410
- GLYCOLYSIS+0.390
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.370
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.360
- MTORC1_SIGNALING+0.330
- HYPOXIA+0.320
- ADIPOGENESIS+0.310
- CHOLESTEROL_HOMEOSTASIS+0.250
- PROTEIN_SECRETION+0.250
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.540
- INTERFERON_GAMMA_RESPONSE-0.520
- ALLOGRAFT_REJECTION-0.500
- IL6_JAK_STAT3_SIGNALING-0.410
- INFLAMMATORY_RESPONSE-0.330
- WNT_BETA_CATENIN_SIGNALING-0.320
- MYC_TARGETS_V2-0.290
- TNFA_SIGNALING_VIA_NFKB-0.280
- COMPLEMENT-0.250
- APICAL_SURFACE-0.190
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR8518241 | — | F | 0.879 |
| 2 | SRR8518414 | — | C | 0.850 |
| 3 | C3L-01632 | — | cohortA4 | 0.824 |
| 4 | MNG1099 | — | — | 0.800 |
| 5 | TCGA-E2-A1LB-01A-11R-A144-07 | — | F | 0.799 |
| 6 | SRR8518380 | — | C | 0.793 |
| 7 | TCGA-CV-6935-01A-11R-1915-07 | — | — | 0.785 |
| 8 | TCGA-AQ-A04L-01B-21R-A10J-07 | — | C | 0.781 |
| 9 | SRR8518157 | — | F | 0.777 |
| 10 | SRR1313112 | — | B | 0.769 |