TCGA-66-2794-01A-01R-1201-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 64
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.560
- MYC_TARGETS_V2+0.560
- MYC_TARGETS_V1+0.550
- INTERFERON_ALPHA_RESPONSE+0.530
- G2M_CHECKPOINT+0.470
- INTERFERON_GAMMA_RESPONSE+0.450
- ALLOGRAFT_REJECTION+0.400
- MTORC1_SIGNALING+0.400
- OXIDATIVE_PHOSPHORYLATION+0.330
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.320
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.450
- ANGIOGENESIS-0.420
- TGF_BETA_SIGNALING-0.330
- COAGULATION-0.280
- MYOGENESIS-0.270
- UV_RESPONSE_DN-0.250
- KRAS_SIGNALING_UP-0.220
- APICAL_JUNCTION-0.140
- HYPOXIA-0.110
- NOTCH_SIGNALING-0.110
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-18-3416-01A-01R-0980-07 | — | cohortSQ2 | 0.926 |
| 2 | TCGA-39-5016-01A-01R-1443-07 | — | cohortSQ2 | 0.906 |
| 3 | SRR6013558 | — | cohortA4 | 0.872 |
| 4 | TCGA-33-4583-01A-01R-1443-07 | — | cohortSQ2 | 0.868 |
| 5 | ERR2278852 | — | — | 0.866 |
| 6 | SRR35579824 | — | E | 0.863 |
| 7 | SRR11296765 | — | — | 0.860 |
| 8 | TCGA-66-2758-01A-02R-0851-07 | — | cohortSQ2 | 0.860 |
| 9 | TCGA-AO-A0J2-01A-11R-A034-07 | — | C | 0.858 |
| 10 | TCGA-GM-A3XL-01A-11R-A22U-07 | — | E | 0.855 |