TCGA-64-5775-01A-01R-1628-07
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
- age_years
- 71
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.560
- MYC_TARGETS_V2+0.520
- G2M_CHECKPOINT+0.480
- E2F_TARGETS+0.470
- TGF_BETA_SIGNALING+0.440
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.380
- UNFOLDED_PROTEIN_RESPONSE+0.380
- UV_RESPONSE_DN+0.370
- MITOTIC_SPINDLE+0.360
- WNT_BETA_CATENIN_SIGNALING+0.360
Top 10 suppressed
- KRAS_SIGNALING_DN-0.380
- BILE_ACID_METABOLISM-0.310
- ESTROGEN_RESPONSE_EARLY-0.260
- ESTROGEN_RESPONSE_LATE-0.260
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.190
- XENOBIOTIC_METABOLISM-0.190
- NOTCH_SIGNALING-0.130
- APICAL_SURFACE-0.110
- SPERMATOGENESIS-0.110
- MYOGENESIS-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR934902 | — | — | 0.914 |
| 2 | SRR934935 | — | — | 0.875 |
| 3 | SRR934813 | — | — | 0.865 |
| 4 | 8ACC0F29-A39E-4C1C-A04C-ED6E5FA80C24 | — | — | 0.850 |
| 5 | SRR934719 | — | — | 0.848 |
| 6 | 2535E07B-4CB8-4608-87F3-D8D6371B8862 | — | — | 0.846 |
| 7 | SRR934817 | — | — | 0.841 |
| 8 | 726D58A7-23E0-492A-B5CE-15DCB11B0C90 | — | — | 0.839 |
| 9 | 9850FF42-592C-4406-A5B3-52109E0E4E70 | — | — | 0.836 |
| 10 | SRR934890 | — | — | 0.833 |