SRR1077405
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.348
- INFLAMMATORY_RESPONSE+0.346
- ALLOGRAFT_REJECTION+0.335
- INTERFERON_ALPHA_RESPONSE+0.319
- ANGIOGENESIS+0.281
- TNFA_SIGNALING_VIA_NFKB+0.255
- IL6_JAK_STAT3_SIGNALING+0.241
- COAGULATION+0.239
- INTERFERON_GAMMA_RESPONSE+0.230
- PANCREAS_BETA_CELLS+0.230
Top 10 suppressed
- MYC_TARGETS_V2-0.536
- OXIDATIVE_PHOSPHORYLATION-0.506
- DNA_REPAIR-0.448
- PROTEIN_SECRETION-0.430
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.402
- UNFOLDED_PROTEIN_RESPONSE-0.398
- MTORC1_SIGNALING-0.358
- ADIPOGENESIS-0.348
- MYC_TARGETS_V1-0.346
- GLYCOLYSIS-0.326
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1488285 | GTEX | — | 0.962 |
| 2 | SRR1358561 | GTEX | — | 0.959 |
| 3 | SRR661433 | GTEX | — | 0.953 |
| 4 | SRR603658 | GTEX | — | 0.949 |
| 5 | SRR1499823 | GTEX | — | 0.948 |
| 6 | SRR1436966 | GTEX | — | 0.947 |
| 7 | SRR1473590 | GTEX | — | 0.946 |
| 8 | SRR1335047 | GTEX | — | 0.945 |
| 9 | SRR655590 | GTEX | — | 0.945 |
| 10 | SRR1335446 | GTEX | — | 0.944 |