SRR15030856
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
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- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- HEDGEHOG_SIGNALING+0.600
- WNT_BETA_CATENIN_SIGNALING+0.430
- TGF_BETA_SIGNALING+0.320
- G2M_CHECKPOINT+0.280
- MITOTIC_SPINDLE+0.280
- NOTCH_SIGNALING+0.270
- HYPOXIA+0.250
- GLYCOLYSIS+0.240
- UV_RESPONSE_DN+0.200
- PROTEIN_SECRETION+0.180
Top 10 suppressed
- IL6_JAK_STAT3_SIGNALING-0.460
- ALLOGRAFT_REJECTION-0.400
- OXIDATIVE_PHOSPHORYLATION-0.400
- INTERFERON_GAMMA_RESPONSE-0.390
- INTERFERON_ALPHA_RESPONSE-0.370
- INFLAMMATORY_RESPONSE-0.360
- FATTY_ACID_METABOLISM-0.340
- PEROXISOME-0.320
- ADIPOGENESIS-0.300
- COAGULATION-0.290
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-D8-A1XD-01A-11R-A14D-07 | — | B | 0.805 |
| 2 | TCGA-98-8021-01A-11R-2247-07 | — | cohortSQ1 | 0.800 |
| 3 | 20120162.TNBC | — | E | 0.784 |
| 4 | TCGA-77-8145-01A-11R-2247-07 | — | cohortSQ1 | 0.778 |
| 5 | MNG335 | — | — | 0.761 |
| 6 | TCGA-CV-5435-01A-01R-1686-07 | — | — | 0.759 |
| 7 | C3N-03662 | — | cohortSQ2 | 0.755 |
| 8 | TCGA-BH-A1ES-01A-11R-A137-07 | — | B | 0.755 |
| 9 | TCGA-51-4081-01A-01R-1100-07 | — | cohortSQ2 | 0.742 |
| 10 | TCGA-AR-A0TP-01A-11R-A084-07 | — | E | 0.739 |