ERR2278875
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.570
- TNFA_SIGNALING_VIA_NFKB+0.570
- ANGIOGENESIS+0.560
- INFLAMMATORY_RESPONSE+0.500
- IL6_JAK_STAT3_SIGNALING+0.480
- HEDGEHOG_SIGNALING+0.400
- IL2_STAT5_SIGNALING+0.400
- KRAS_SIGNALING_UP+0.370
- ALLOGRAFT_REJECTION+0.330
- COMPLEMENT+0.330
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.520
- ADIPOGENESIS-0.300
- FATTY_ACID_METABOLISM-0.280
- BILE_ACID_METABOLISM-0.250
- PROTEIN_SECRETION-0.190
- HEME_METABOLISM-0.180
- PEROXISOME-0.160
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.160
- P53_PATHWAY-0.130
- DNA_REPAIR-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-56-8503-01A-11R-2403-07 | — | cohortSQ1 | 0.914 |
| 2 | TCGA-BT-A3PK-01A-21R-A220-07 | — | — | 0.906 |
| 3 | SRR4296104 | — | cohortA1 | 0.886 |
| 4 | 20050166.TNBC | — | D | 0.881 |
| 5 | TCGA-FD-A3B7-01A-31R-A20F-07 | — | — | 0.879 |
| 6 | TCGA-OR-A5J8-01 | Adrenocortical Carcinoma | Adrenocortical Carcinoma, Usual Type | 0.866 |
| 7 | BS_NR3P3GN2 | high-grade glioma | — | 0.866 |
| 8 | R385 | — | — | 0.852 |
| 9 | c56e13bb-f1b0-4ee3-85c1-807c7c3bcef9 | — | — | 0.852 |
| 10 | TCGA-85-8582-01A-21R-2403-07 | — | cohortSQ1 | 0.844 |