BS_TGS109T3
high-grade glioma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- high-grade glioma
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- high-grade glioma
- overall_survival_months
- 16.491458607095925
- age_years
- 10.488
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.469
- G2M_CHECKPOINT+0.454
- INTERFERON_ALPHA_RESPONSE+0.367
- MYC_TARGETS_V1+0.289
- MITOTIC_SPINDLE+0.281
- NOTCH_SIGNALING+0.265
- MYC_TARGETS_V2+0.211
- OXIDATIVE_PHOSPHORYLATION+0.204
- INTERFERON_GAMMA_RESPONSE+0.183
- WNT_BETA_CATENIN_SIGNALING+0.154
Top 10 suppressed
- ANGIOGENESIS-0.332
- MYOGENESIS-0.302
- INFLAMMATORY_RESPONSE-0.278
- P53_PATHWAY-0.267
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.266
- COMPLEMENT-0.263
- HYPOXIA-0.256
- BILE_ACID_METABOLISM-0.255
- IL2_STAT5_SIGNALING-0.251
- TNFA_SIGNALING_VIA_NFKB-0.233
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 88328 | EPN | Supratentorial EPN | 0.844 |
| 2 | TCGA-34-5231-01A-21R-1820-07 | — | cohortSQ2 | 0.817 |
| 3 | SRR8518219 | — | E | 0.816 |
| 4 | BS_B1C6GZ84 | Diffuse intrinsic pontine glioma | — | 0.806 |
| 5 | TCGA-63-7023-01A-11R-1949-07 | — | cohortSQ2 | 0.806 |
| 6 | 3A5F200F-C6E0-487B-9C3D-BB32C65480E8 | — | — | 0.805 |
| 7 | GSM6454749 | — | F | 0.794 |
| 8 | TCGA-C8-A27A-01A-11R-A169-07 | — | B | 0.786 |
| 9 | 848C73F3-ABD7-47FD-BF70-FF29FBDF6F61 | — | — | 0.785 |
| 10 | fac69f81-0d8c-40a0-8263-b54d5f06d7b3 | — | — | 0.778 |