BS_99B1XRZQ
EPN · EPN Tumor
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- EPN Tumor
- cancer_type
- EPN
- subtype
- EPN Tumor
- overall_survival_months
- 19.44
- os_event
- false
- age_years
- 12.762
- e1_e2
- E2
- umap1_2d
- -5.512566979
- umap2_2d
- 1.705873905
- umap1_3d
- 0.784758581
- umap2_3d
- 2.587859938
- umap3_3d
- 0.483251016
- dataset
- EPN-CBTN
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.460
- MYC_TARGETS_V2+0.440
- G2M_CHECKPOINT+0.410
- MYC_TARGETS_V1+0.370
- KRAS_SIGNALING_DN+0.120
- MYOGENESIS+0.030
- GLYCOLYSIS+0.020
- SPERMATOGENESIS+0.020
- WNT_BETA_CATENIN_SIGNALING-0.010
- MITOTIC_SPINDLE-0.020
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.510
- PROTEIN_SECRETION-0.460
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.450
- TNFA_SIGNALING_VIA_NFKB-0.440
- APOPTOSIS-0.430
- COMPLEMENT-0.390
- INTERFERON_GAMMA_RESPONSE-0.390
- IL6_JAK_STAT3_SIGNALING-0.380
- INFLAMMATORY_RESPONSE-0.380
- ADIPOGENESIS-0.370
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
5 twins match this tumor's tissue · 5 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_99B1XRZQ | Spinal Cord Ependymoma | — | 0.940 |
| 2 | BS_1BWP5MCT | medulloblastoma | — | 0.920 |
| 3 | 065d8d7a-c241-4a24-8f77-2cb5a4341f35 | — | — | 0.918 |
| 4 | SRR934968 | — | — | 0.911 |
| 5 | BS_DBEX7AG2 | Embryonal tumors | — | 0.908 |
| 6 | BS_VVFBW0YH | medulloblastoma | — | 0.907 |
| 7 | TCGA-18-4083-01A-01R-1100-07 | — | cohortSQ2 | 0.907 |
| 8 | C3N-03886 | — | cohortMD1 | 0.906 |
| 9 | SAMN03290905 | — | — | 0.905 |
| 10 | BS_3V3KE3VT | medulloblastoma | — | 0.903 |