SRR1467590
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TNFA_SIGNALING_VIA_NFKB+0.381
- INFLAMMATORY_RESPONSE+0.362
- KRAS_SIGNALING_DN+0.325
- ALLOGRAFT_REJECTION+0.319
- CHOLESTEROL_HOMEOSTASIS+0.303
- INTERFERON_ALPHA_RESPONSE+0.297
- APICAL_SURFACE+0.280
- KRAS_SIGNALING_UP+0.242
- IL6_JAK_STAT3_SIGNALING+0.230
- SPERMATOGENESIS+0.228
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.504
- MYC_TARGETS_V2-0.477
- MYC_TARGETS_V1-0.442
- DNA_REPAIR-0.422
- UNFOLDED_PROTEIN_RESPONSE-0.365
- E2F_TARGETS-0.320
- G2M_CHECKPOINT-0.311
- MITOTIC_SPINDLE-0.299
- PROTEIN_SECRETION-0.289
- UV_RESPONSE_DN-0.258
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1120755 | GTEX | — | 0.946 |
| 2 | SRR1310623 | GTEX | — | 0.942 |
| 3 | SRR1343879 | GTEX | — | 0.932 |
| 4 | SRR612455 | GTEX | — | 0.921 |
| 5 | SRR820379 | GTEX | — | 0.907 |
| 6 | SRR1335047 | GTEX | — | 0.904 |
| 7 | SRR1358826 | GTEX | — | 0.903 |
| 8 | SRR1368964 | GTEX | — | 0.902 |
| 9 | SRR1468141 | GTEX | — | 0.901 |
| 10 | SRR1317494 | GTEX | — | 0.899 |