TCGA-BH-A1FE-01A-11R-A13Q-07
— · A
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- A
- subtype
- A
- overall_survival_months
- 76
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_GAMMA_RESPONSE+0.440
- TGF_BETA_SIGNALING+0.440
- UV_RESPONSE_DN+0.440
- ALLOGRAFT_REJECTION+0.420
- INTERFERON_ALPHA_RESPONSE+0.420
- INFLAMMATORY_RESPONSE+0.410
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.360
- IL6_JAK_STAT3_SIGNALING+0.340
- TNFA_SIGNALING_VIA_NFKB+0.340
- KRAS_SIGNALING_UP+0.330
Top 10 suppressed
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.470
- OXIDATIVE_PHOSPHORYLATION-0.380
- DNA_REPAIR-0.310
- MYOGENESIS-0.300
- MYC_TARGETS_V2-0.280
- GLYCOLYSIS-0.270
- FATTY_ACID_METABOLISM-0.260
- XENOBIOTIC_METABOLISM-0.190
- ESTROGEN_RESPONSE_LATE-0.160
- UV_RESPONSE_UP-0.150
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-EW-A1IY-01A-11R-A13Q-07 | — | B | 0.867 |
| 2 | 6a43f966-cb2b-47ee-b0f4-c269707daa88 | — | — | 0.859 |
| 3 | 8828489a-e6fd-43ca-9232-e1b759d6edcf | — | — | 0.851 |
| 4 | MDT-AP-2796 | Med | Medulloblastoma | 0.843 |
| 5 | TCGA-E2-A1B1-01A-21R-A12P-07 | — | A | 0.841 |
| 6 | TCGA-E2-A15M-01A-11R-A12D-07 | — | A | 0.841 |
| 7 | TCGA-55-6978-01A-11R-1949-07 | — | cohortA1 | 0.838 |
| 8 | 1bc1db1d-c538-4aad-be91-ce3d683221e9 | — | — | 0.832 |
| 9 | TCGA-98-7454-01A-11R-2045-07 | — | cohortMD2 | 0.828 |
| 10 | 57f2cc66-9163-4e07-93f8-d5a2158e7125 | — | — | 0.825 |