C3L-00904
— · cohortSQ1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ1
- subtype
- cohortSQ1
- age_years
- 71.70431211
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.560
- TNFA_SIGNALING_VIA_NFKB+0.520
- INTERFERON_GAMMA_RESPONSE+0.510
- TGF_BETA_SIGNALING+0.390
- INFLAMMATORY_RESPONSE+0.350
- ALLOGRAFT_REJECTION+0.340
- IL6_JAK_STAT3_SIGNALING+0.320
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.300
- APOPTOSIS+0.270
- PROTEIN_SECRETION+0.260
Top 10 suppressed
- MYC_TARGETS_V2-0.340
- FATTY_ACID_METABOLISM-0.290
- NOTCH_SIGNALING-0.220
- BILE_ACID_METABOLISM-0.180
- OXIDATIVE_PHOSPHORYLATION-0.160
- ADIPOGENESIS-0.120
- HEDGEHOG_SIGNALING-0.120
- HEME_METABOLISM-0.100
- WNT_BETA_CATENIN_SIGNALING-0.090
- PEROXISOME-0.070
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 270a14bb-8ae5-4372-a66b-b3d71bf217f7 | — | — | 0.830 |
| 2 | MNG751 | — | — | 0.828 |
| 3 | 6fdba671-fb71-438f-ad62-e3d515e0222d | — | — | 0.827 |
| 4 | TCGA-DK-A2I4-01A-11R-A21D-07 | — | — | 0.821 |
| 5 | SRR1516052 | — | — | 0.819 |
| 6 | 8914dcad-b703-4099-a5dd-edb9cedc104c | — | — | 0.814 |
| 7 | SRR35579823 | — | D | 0.812 |
| 8 | TCGA-FD-A3B4-01A-12R-A206-07 | — | — | 0.810 |
| 9 | SRR975589 | — | — | 0.809 |
| 10 | MNG215 | — | — | 0.806 |