20ed86b0-2e3d-44ec-88cd-eac5486fe15c
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- age_years
- 90
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.350
- MYC_TARGETS_V2+0.340
- HEDGEHOG_SIGNALING+0.320
- MYC_TARGETS_V1+0.270
- APICAL_JUNCTION+0.210
- WNT_BETA_CATENIN_SIGNALING+0.200
- PANCREAS_BETA_CELLS+0.190
- MYOGENESIS+0.180
- ANGIOGENESIS+0.170
- NOTCH_SIGNALING+0.170
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.650
- INTERFERON_GAMMA_RESPONSE-0.590
- ALLOGRAFT_REJECTION-0.520
- INFLAMMATORY_RESPONSE-0.430
- IL6_JAK_STAT3_SIGNALING-0.390
- COMPLEMENT-0.350
- FATTY_ACID_METABOLISM-0.350
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.300
- BILE_ACID_METABOLISM-0.280
- CHOLESTEROL_HOMEOSTASIS-0.280
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-NC-A5HP-01A-11R-A26W-07 | — | cohortSQ1 | 0.847 |
| 2 | TCGA-AC-A5XU-01A-11R-A28M-07 | — | B | 0.846 |
| 3 | b6c4399b-a4b6-4fcd-815c-554dc1a79ff7 | — | — | 0.822 |
| 4 | SRR2016936 | — | — | 0.805 |
| 5 | 701e70ac-31d2-4e78-95e1-3fa2bb466e83 | — | — | 0.804 |
| 6 | TCGA-P3-A6SX-01A-11R-A34R-07 | — | — | 0.802 |
| 7 | 20130253.TNBC | — | E | 0.799 |
| 8 | ERR2208919 | — | — | 0.799 |
| 9 | 4e24bc58-d246-4c96-952a-a18f95d142b2 | — | — | 0.785 |
| 10 | 9a38d0dc-6b2c-439d-b10e-efd0f1cba209 | — | — | 0.781 |