62b39052-bdb9-4ba6-9eb0-f117480c98a8
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MITOTIC_SPINDLE+0.400
- MYC_TARGETS_V1+0.400
- MYC_TARGETS_V2+0.400
- E2F_TARGETS+0.300
- G2M_CHECKPOINT+0.300
- PROTEIN_SECRETION+0.300
- DNA_REPAIR+0.200
- UV_RESPONSE_DN+0.200
- ANDROGEN_RESPONSE+0.100
- PI3K_AKT_MTOR_SIGNALING+0.100
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.600
- IL6_JAK_STAT3_SIGNALING-0.600
- INTERFERON_GAMMA_RESPONSE-0.600
- INFLAMMATORY_RESPONSE-0.500
- INTERFERON_ALPHA_RESPONSE-0.500
- COMPLEMENT-0.400
- KRAS_SIGNALING_UP-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.400
- TNFA_SIGNALING_VIA_NFKB-0.400
- XENOBIOTIC_METABOLISM-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-O2-A5IB-01A-11R-A27Q-07 | — | cohortMD1 | 0.909 |
| 2 | TCGA-91-6847-01A-11R-1949-07 | — | cohortMD1 | 0.904 |
| 3 | TCGA-33-4587-01A-11R-2125-07 | — | cohortMD1 | 0.901 |
| 4 | TCGA-78-7155-01A-11R-2039-07 | — | cohortMD1 | 0.898 |
| 5 | s0122172 | — | — | 0.898 |
| 6 | SRR9879265 | — | cohortMD1 | 0.891 |
| 7 | TCGA-77-A5G6-01A-11R-A27Q-07 | — | cohortSQ1 | 0.888 |
| 8 | 20120131.TNBC | — | E | 0.885 |
| 9 | SJEPD031150_D1.RNA-Seq | EPN | EPN Tumor | 0.884 |
| 10 | TCGA-A8-A0AB-01A-11R-A034-07 | — | B | 0.884 |