TCGA-CV-6955-01A-11R-2016-07
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- overall_survival_months
- 0.076255708
- sex
- female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.540
- INTERFERON_GAMMA_RESPONSE+0.480
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.470
- BILE_ACID_METABOLISM+0.360
- XENOBIOTIC_METABOLISM+0.350
- ALLOGRAFT_REJECTION+0.340
- PI3K_AKT_MTOR_SIGNALING+0.330
- CHOLESTEROL_HOMEOSTASIS+0.310
- OXIDATIVE_PHOSPHORYLATION+0.310
- P53_PATHWAY+0.290
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.600
- ANGIOGENESIS-0.580
- E2F_TARGETS-0.410
- MYC_TARGETS_V2-0.400
- HEDGEHOG_SIGNALING-0.320
- G2M_CHECKPOINT-0.310
- MYOGENESIS-0.290
- DNA_REPAIR-0.260
- MYC_TARGETS_V1-0.250
- APICAL_JUNCTION-0.170
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-H7-7774-01A-21R-2081-07 | — | — | 0.925 |
| 2 | TCGA-CQ-6223-01A-11R-1915-07 | — | — | 0.862 |
| 3 | SRR15069614 | — | — | 0.858 |
| 4 | X44dc4429.1bfa.4845.b2ed.028feafe7d4a | — | cohortA1 | 0.834 |
| 5 | SRR8613769 | — | F | 0.832 |
| 6 | TCGA-OR-A5LH-01 | Adrenocortical Carcinoma | Adrenocortical Carcinoma, Usual Type | 0.818 |
| 7 | BS_AG3D3435 | subependymal giant cell astrocytoma(SEGA) | — | 0.785 |
| 8 | SRR26320087 | — | — | 0.775 |
| 9 | TCGA-A8-A09Z-01A-11R-A00Z-07 | — | B | 0.773 |
| 10 | TCGA-CV-A45V-01A-21R-A24Z-07 | — | — | 0.766 |