MDT-AP-3297
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- age_years
- 5.9
- sex
- M
- new_clusters
- C1
- umap1_2d
- 4.003953241
- umap2_2d
- -0.808501722
- umap1_3d
- -0.518166039
- umap2_3d
- -4.007075522
- umap3_3d
- -0.295395054
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.660
- G2M_CHECKPOINT+0.660
- MYC_TARGETS_V1+0.550
- MITOTIC_SPINDLE+0.470
- TGF_BETA_SIGNALING+0.420
- MTORC1_SIGNALING+0.410
- MYC_TARGETS_V2+0.410
- UNFOLDED_PROTEIN_RESPONSE+0.340
- DNA_REPAIR+0.320
- ANDROGEN_RESPONSE+0.290
Top 10 suppressed
- PANCREAS_BETA_CELLS-0.460
- MYOGENESIS-0.410
- COAGULATION-0.400
- HEDGEHOG_SIGNALING-0.400
- INTERFERON_ALPHA_RESPONSE-0.400
- ALLOGRAFT_REJECTION-0.390
- IL6_JAK_STAT3_SIGNALING-0.370
- INFLAMMATORY_RESPONSE-0.370
- COMPLEMENT-0.350
- HYPOXIA-0.340
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-2497 | Med | Medulloblastoma | 0.962 |
| 2 | MDT-AP-0167 | Med | Medulloblastoma | 0.939 |
| 3 | R143 | — | — | 0.921 |
| 4 | MDT-AP-3357 | Med | Medulloblastoma | 0.919 |
| 5 | C6A16A8F-0AB7-42E9-A068-15EECF2912D3 | — | — | 0.900 |
| 6 | MDT-AP-0164 | Med | Medulloblastoma | 0.896 |
| 7 | BS_G23JJAZY | EPN | Supratentorial EPN | 0.887 |
| 8 | MDT-AP-3307 | Med | Medulloblastoma | 0.884 |
| 9 | MDT-AP-2085 | Med | Medulloblastoma | 0.881 |
| 10 | MNG753 | — | — | 0.880 |