TCGA-S3-AA0Z-01A-11R-A41B-07
— · E
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- E
- subtype
- E
- overall_survival_months
- 21
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.520
- G2M_CHECKPOINT+0.510
- MITOTIC_SPINDLE+0.350
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.330
- ALLOGRAFT_REJECTION+0.250
- IL6_JAK_STAT3_SIGNALING+0.150
- INTERFERON_GAMMA_RESPONSE+0.150
- SPERMATOGENESIS+0.120
- UV_RESPONSE_UP+0.120
- WNT_BETA_CATENIN_SIGNALING+0.120
Top 10 suppressed
- ESTROGEN_RESPONSE_EARLY-0.410
- OXIDATIVE_PHOSPHORYLATION-0.410
- FATTY_ACID_METABOLISM-0.390
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.380
- UV_RESPONSE_DN-0.300
- ANGIOGENESIS-0.290
- ESTROGEN_RESPONSE_LATE-0.290
- ADIPOGENESIS-0.270
- ANDROGEN_RESPONSE-0.270
- XENOBIOTIC_METABOLISM-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR8613719 | — | D | 0.816 |
| 2 | AUR-AFEA-TTM6-A-1-0-R-A741-41 | — | D | 0.811 |
| 3 | TCGA-BH-A18Q-01A-12R-A12D-07 | — | D | 0.777 |
| 4 | TCGA-GM-A2DH-01A-11R-A180-07 | — | C | 0.755 |
| 5 | SRR5088892 | — | — | 0.750 |
| 6 | TCGA-B6-A3ZX-01A-11R-A239-07 | — | D | 0.747 |
| 7 | SRR5088834 | — | — | 0.746 |
| 8 | 20110168.TNBC | — | D | 0.743 |
| 9 | TCGA-B6-A0RT-01A-21R-A084-07 | — | D | 0.742 |
| 10 | TCGA-43-A475-01A-11R-A24H-07 | — | cohortSQ2 | 0.738 |