SJEPD001501_D1.RNA-Seq
EPN · Supratentorial EPN
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- Supratentorial EPN
- cancer_type
- EPN
- subtype
- Supratentorial EPN
- fusion
- ZFTA_RELA
- e1_e2
- E1
- umap1_2d
- -2.539706289
- umap2_2d
- 0.589560865
- umap1_3d
- 0.94880807
- umap2_3d
- 3.236779941
- umap3_3d
- -2.780332614
- dataset
- EPN-StJude
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- WNT_BETA_CATENIN_SIGNALING+0.490
- TNFA_SIGNALING_VIA_NFKB+0.420
- UV_RESPONSE_UP+0.360
- TGF_BETA_SIGNALING+0.310
- APICAL_SURFACE+0.260
- INTERFERON_ALPHA_RESPONSE+0.230
- PI3K_AKT_MTOR_SIGNALING+0.220
- CHOLESTEROL_HOMEOSTASIS+0.190
- INFLAMMATORY_RESPONSE+0.190
- P53_PATHWAY+0.190
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.370
- E2F_TARGETS-0.260
- G2M_CHECKPOINT-0.240
- SPERMATOGENESIS-0.190
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.150
- MITOTIC_SPINDLE-0.140
- COMPLEMENT-0.120
- UV_RESPONSE_DN-0.120
- PROTEIN_SECRETION-0.100
- ADIPOGENESIS-0.080
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MNG1254 | — | — | 0.686 |
| 2 | SRR8942960 | — | — | 0.674 |
| 3 | TCGA-B6-A0WY-01A-11R-A109-07 | — | A | 0.655 |
| 4 | BS_CXVJK2FY | Supratentorial Ependymoma | — | 0.654 |
| 5 | SJEPD001541_D1.RNA-Seq | EPN | Supratentorial EPN | 0.638 |
| 6 | SJEPD001535_R1.RNA-Seq | EPN | Posterior Fossa EPN | 0.632 |
| 7 | SAMN03290922 | — | — | 0.629 |
| 8 | SJEPD034_D.RNA-Seq | EPN | Supratentorial EPN | 0.629 |
| 9 | MNG399 | — | — | 0.624 |
| 10 | BS_CXVJK2FY | EPN | Supratentorial EPN | 0.623 |