SRR8943014
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.620
- INTERFERON_GAMMA_RESPONSE+0.490
- FATTY_ACID_METABOLISM+0.400
- PEROXISOME+0.380
- OXIDATIVE_PHOSPHORYLATION+0.360
- BILE_ACID_METABOLISM+0.330
- XENOBIOTIC_METABOLISM+0.330
- PROTEIN_SECRETION+0.320
- ANDROGEN_RESPONSE+0.280
- HEME_METABOLISM+0.260
Top 10 suppressed
- G2M_CHECKPOINT-0.380
- MITOTIC_SPINDLE-0.360
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.330
- E2F_TARGETS-0.240
- WNT_BETA_CATENIN_SIGNALING-0.240
- HYPOXIA-0.220
- APICAL_JUNCTION-0.170
- SPERMATOGENESIS-0.120
- MYC_TARGETS_V2-0.110
- ANGIOGENESIS-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-E2-A1IK-01A-11R-A144-07 | — | B | 0.804 |
| 2 | SRR12696744 | — | — | 0.795 |
| 3 | TCGA-BH-A0HO-01A-11R-A034-07 | — | B | 0.795 |
| 4 | SRR15069614 | — | — | 0.769 |
| 5 | e59f49c0-d7ce-44c3-9590-9b65128d7f8b | — | — | 0.760 |
| 6 | 20040027.LumB | — | C | 0.757 |
| 7 | fea785bb-de96-4411-8bf4-a7d254af9ff9 | — | — | 0.755 |
| 8 | ERR2208921 | — | — | 0.750 |
| 9 | C3L-02549 | — | cohortA1 | 0.748 |
| 10 | C3N-00572 | — | cohortA1 | 0.744 |