SRR12202472
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.450
- OXIDATIVE_PHOSPHORYLATION+0.420
- MYC_TARGETS_V1+0.400
- NOTCH_SIGNALING+0.380
- TGF_BETA_SIGNALING+0.340
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.330
- PI3K_AKT_MTOR_SIGNALING+0.280
- MTORC1_SIGNALING+0.270
- ADIPOGENESIS+0.240
- MITOTIC_SPINDLE+0.240
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.600
- INTERFERON_GAMMA_RESPONSE-0.490
- IL6_JAK_STAT3_SIGNALING-0.360
- ALLOGRAFT_REJECTION-0.310
- HEDGEHOG_SIGNALING-0.230
- INFLAMMATORY_RESPONSE-0.220
- XENOBIOTIC_METABOLISM-0.180
- KRAS_SIGNALING_DN-0.170
- BILE_ACID_METABOLISM-0.140
- CHOLESTEROL_HOMEOSTASIS-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R205 | — | — | 0.803 |
| 2 | R266 | — | — | 0.799 |
| 3 | SRR12202463 | — | — | 0.791 |
| 4 | TCGA-75-7027-01A-11R-1949-07 | — | cohortA4 | 0.781 |
| 5 | MNG1017 | — | — | 0.766 |
| 6 | s0112297 | — | — | 0.759 |
| 7 | TCGA-C8-A137-01A-11R-A115-07 | — | C | 0.752 |
| 8 | TCGA-AC-A23H-01A-11R-A157-07 | — | C | 0.752 |
| 9 | SRR650181 | — | — | 0.752 |
| 10 | SRR13311164 | — | — | 0.748 |