7f51ff28-397d-466f-82b0-25e9c9182ea7
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- COAGULATION+0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.500
- IL6_JAK_STAT3_SIGNALING+0.500
- ALLOGRAFT_REJECTION+0.400
- ANGIOGENESIS+0.400
- APICAL_JUNCTION+0.400
- COMPLEMENT+0.400
- INFLAMMATORY_RESPONSE+0.400
- MYOGENESIS+0.400
- NOTCH_SIGNALING+0.400
Top 10 suppressed
- E2F_TARGETS-0.700
- G2M_CHECKPOINT-0.600
- MYC_TARGETS_V1-0.600
- PROTEIN_SECRETION-0.500
- OXIDATIVE_PHOSPHORYLATION-0.400
- UNFOLDED_PROTEIN_RESPONSE-0.400
- MTORC1_SIGNALING-0.300
- MYC_TARGETS_V2-0.300
- ANDROGEN_RESPONSE-0.200
- DNA_REPAIR-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR2689710 | — | — | 0.951 |
| 2 | BS_TA9WP4TH | Med | Medulloblastoma | 0.936 |
| 3 | MDT-AP-1125 | Med | Medulloblastoma | 0.936 |
| 4 | 9b308588-5e79-46ab-b186-6edd686695c6 | — | — | 0.936 |
| 5 | SAMN03290902 | — | — | 0.933 |
| 6 | R52 | — | — | 0.932 |
| 7 | R89 | — | — | 0.928 |
| 8 | BS_ZV9Z3SY6 | pilocytic astrocytoma | — | 0.920 |
| 9 | MDT-AP-0384 | Med | Medulloblastoma | 0.917 |
| 10 | TCGA-A2-A0CO-01A-13R-A22K-07 | — | A | 0.916 |