SRR8518233
— · D
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- D
- subtype
- D
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.480
- G2M_CHECKPOINT+0.480
- TGF_BETA_SIGNALING+0.470
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.450
- IL6_JAK_STAT3_SIGNALING+0.400
- ALLOGRAFT_REJECTION+0.390
- INTERFERON_GAMMA_RESPONSE+0.330
- MITOTIC_SPINDLE+0.330
- MYC_TARGETS_V1+0.330
- ANGIOGENESIS+0.320
Top 10 suppressed
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.380
- CHOLESTEROL_HOMEOSTASIS-0.330
- FATTY_ACID_METABOLISM-0.320
- PEROXISOME-0.210
- KRAS_SIGNALING_DN-0.190
- ADIPOGENESIS-0.170
- ESTROGEN_RESPONSE_EARLY-0.170
- P53_PATHWAY-0.140
- XENOBIOTIC_METABOLISM-0.130
- APICAL_SURFACE-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-DK-A3WX-01A-22R-A22U-07 | — | — | 0.834 |
| 2 | TCGA-ZF-AA58-01A-12R-A42T-07 | — | — | 0.829 |
| 3 | SRR8518214 | — | D | 0.828 |
| 4 | TCGA-GC-A3YS-01A-11R-A23N-07 | — | — | 0.828 |
| 5 | TCGA-FD-A3B3-01A-12R-A206-07 | — | — | 0.827 |
| 6 | TCGA-FD-A3B7-01A-31R-A20F-07 | — | — | 0.826 |
| 7 | AUR-AE5H-TTP1-A-1-1-R-A742-41 | — | D | 0.821 |
| 8 | TCGA-55-6978-01A-11R-1949-07 | — | cohortA1 | 0.821 |
| 9 | TCGA-CN-5363-01A-01R-1436-07 | — | — | 0.815 |
| 10 | SRR8943028 | — | — | 0.813 |