16ab68fd-4948-4cd5-b5d8-1b2e8a1fd3cb
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- ANGIOGENESIS+0.400
- APICAL_SURFACE+0.400
- COAGULATION+0.400
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.400
- KRAS_SIGNALING_DN+0.300
- MYOGENESIS+0.300
- NOTCH_SIGNALING+0.300
- APICAL_JUNCTION+0.200
- CHOLESTEROL_HOMEOSTASIS+0.200
- PANCREAS_BETA_CELLS+0.200
Top 10 suppressed
- PROTEIN_SECRETION-0.500
- G2M_CHECKPOINT-0.400
- MITOTIC_SPINDLE-0.400
- MYC_TARGETS_V1-0.400
- UNFOLDED_PROTEIN_RESPONSE-0.400
- ANDROGEN_RESPONSE-0.300
- E2F_TARGETS-0.300
- MTORC1_SIGNALING-0.300
- OXIDATIVE_PHOSPHORYLATION-0.300
- PI3K_AKT_MTOR_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R81 | — | — | 0.894 |
| 2 | TCGA-XF-A9SP-01A-11R-A39I-07 | — | — | 0.861 |
| 3 | TCGA-MP-A4TD-01A-32R-A262-07 | — | cohortA3 | 0.853 |
| 4 | 12305e97-f72f-4de7-9735-4cdbecb60296 | — | — | 0.850 |
| 5 | SAMN03290910 | — | — | 0.848 |
| 6 | SRR8943033 | — | — | 0.833 |
| 7 | SRR493947 | — | cohortA1 | 0.831 |
| 8 | a6b176e9-f4fc-4188-9771-ab2f3e00a4a8 | — | — | 0.826 |
| 9 | 69d9a82b-5c37-45bd-a1cf-ffe1392e84fc | — | — | 0.823 |
| 10 | TCGA-FD-A43U-01A-11R-A23W-07 | — | — | 0.818 |