1c7309b2-91f0-4305-aad7-f86c0d143559
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.500
- G2M_CHECKPOINT+0.500
- DNA_REPAIR+0.400
- MYC_TARGETS_V1+0.400
- MYC_TARGETS_V2+0.400
- OXIDATIVE_PHOSPHORYLATION+0.400
- PI3K_AKT_MTOR_SIGNALING+0.400
- INTERFERON_ALPHA_RESPONSE+0.300
- MTORC1_SIGNALING+0.300
- UNFOLDED_PROTEIN_RESPONSE+0.300
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.400
- COAGULATION-0.400
- BILE_ACID_METABOLISM-0.300
- COMPLEMENT-0.300
- INFLAMMATORY_RESPONSE-0.300
- KRAS_SIGNALING_UP-0.300
- ANGIOGENESIS-0.200
- APICAL_JUNCTION-0.200
- APICAL_SURFACE-0.200
- ESTROGEN_RESPONSE_EARLY-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MNG979 | — | — | 0.830 |
| 2 | 94F9B9B1-A23E-4947-BD09-67CBA3052C51 | — | — | 0.823 |
| 3 | EE4F9349-F750-4471-BFE7-7230784569E1 | — | — | 0.822 |
| 4 | aMVAC.P_011_TURBT_S228 | — | — | 0.811 |
| 5 | SRR934990 | — | — | 0.804 |
| 6 | 3E5F6B52-112E-4F87-B49C-061B9DFD1E2D | — | — | 0.796 |
| 7 | E0DE33EA-C3DF-478E-9C4D-86E3C7B3A1D9 | — | — | 0.796 |
| 8 | TCGA-91-6836-01A-21R-1858-07 | — | cohortA1 | 0.794 |
| 9 | TCGA-77-8009-01A-11R-2187-07 | — | cohortSQ2 | 0.792 |
| 10 | 8BC036E8-0EA0-4346-A551-2A5F8975FEAB | — | — | 0.788 |