MDT-AP-1122
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 16.799999999999997
- os_event
- false
- age_years
- 6
- sex
- M
- new_clusters
- C6
- umap1_2d
- 3.667907682
- umap2_2d
- 7.081646727
- umap1_3d
- 2.495809007
- umap2_3d
- -0.419305369
- umap3_3d
- -4.813405168
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.390
- DNA_REPAIR+0.380
- UNFOLDED_PROTEIN_RESPONSE+0.380
- G2M_CHECKPOINT+0.310
- PROTEIN_SECRETION+0.310
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.300
- MITOTIC_SPINDLE+0.290
- E2F_TARGETS+0.260
- FATTY_ACID_METABOLISM+0.250
- MYC_TARGETS_V1+0.250
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.480
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.440
- INFLAMMATORY_RESPONSE-0.400
- TNFA_SIGNALING_VIA_NFKB-0.380
- APICAL_SURFACE-0.360
- COAGULATION-0.350
- IL6_JAK_STAT3_SIGNALING-0.300
- IL2_STAT5_SIGNALING-0.260
- KRAS_SIGNALING_UP-0.260
- ANGIOGENESIS-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
5 twins match this tumor's tissue · 5 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-1214 | Med | Medulloblastoma | 0.888 |
| 2 | BS_QXKRN6CR | EPN | Supratentorial EPN | 0.868 |
| 3 | BS_KSKZ9J7J | Embryonal tumors | — | 0.863 |
| 4 | BS_QXKRN6CR | Supratentorial Ependymoma | — | 0.857 |
| 5 | BS_7G42J2SK | Supratentorial Ependymoma | — | 0.856 |
| 6 | BS_BSV07M7Z | Med | Medulloblastoma | 0.854 |
| 7 | TCGA-58-A46K-01A-11R-A24H-07 | — | cohortSQ2 | 0.852 |
| 8 | BS_H4NXBD2D | Supratentorial Ependymoma | — | 0.837 |
| 9 | SAMN03290941 | — | — | 0.828 |
| 10 | MNG241 | — | — | 0.827 |