SRR604528
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- ANGIOGENESIS+0.459
- HEDGEHOG_SIGNALING+0.446
- TNFA_SIGNALING_VIA_NFKB+0.439
- KRAS_SIGNALING_DN+0.408
- INFLAMMATORY_RESPONSE+0.373
- PANCREAS_BETA_CELLS+0.339
- IL6_JAK_STAT3_SIGNALING+0.325
- APICAL_SURFACE+0.300
- ESTROGEN_RESPONSE_EARLY+0.256
- KRAS_SIGNALING_UP+0.233
Top 10 suppressed
- MYC_TARGETS_V1-0.562
- DNA_REPAIR-0.525
- MYC_TARGETS_V2-0.493
- PROTEIN_SECRETION-0.424
- OXIDATIVE_PHOSPHORYLATION-0.415
- E2F_TARGETS-0.413
- UNFOLDED_PROTEIN_RESPONSE-0.347
- G2M_CHECKPOINT-0.342
- MTORC1_SIGNALING-0.294
- MITOTIC_SPINDLE-0.285
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1316392 | GTEX | — | 0.942 |
| 2 | SRR1310136 | GTEX | — | 0.932 |
| 3 | MNG130 | — | — | 0.932 |
| 4 | SRR1322456 | GTEX | — | 0.929 |
| 5 | SRR608368 | GTEX | — | 0.928 |
| 6 | SRR1315866 | GTEX | — | 0.913 |
| 7 | SRR1359171 | GTEX | — | 0.911 |
| 8 | SRR603752 | GTEX | — | 0.909 |
| 9 | C3L-00412 | — | cohortA1 | 0.906 |
| 10 | BS_YB2RXRHT | pilocytic astrocytoma | — | 0.905 |