SRR12202410
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.400
- WNT_BETA_CATENIN_SIGNALING+0.370
- HEDGEHOG_SIGNALING+0.300
- INTERFERON_GAMMA_RESPONSE+0.300
- PANCREAS_BETA_CELLS+0.250
- KRAS_SIGNALING_DN+0.210
- IL6_JAK_STAT3_SIGNALING+0.200
- TNFA_SIGNALING_VIA_NFKB+0.200
- HYPOXIA+0.140
- P53_PATHWAY+0.110
Top 10 suppressed
- PROTEIN_SECRETION-0.530
- MYC_TARGETS_V1-0.420
- OXIDATIVE_PHOSPHORYLATION-0.370
- ANDROGEN_RESPONSE-0.350
- UNFOLDED_PROTEIN_RESPONSE-0.310
- MTORC1_SIGNALING-0.300
- ADIPOGENESIS-0.290
- ANGIOGENESIS-0.260
- E2F_TARGETS-0.250
- FATTY_ACID_METABOLISM-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R186 | — | — | 0.818 |
| 2 | SRR12202413 | — | — | 0.813 |
| 3 | TCGA-LD-A7W5-01A-22R-A352-07 | — | A | 0.808 |
| 4 | 002260fb-3015-4876-b8fd-edffd7fc95e8 | — | — | 0.798 |
| 5 | SRR8613711 | — | D | 0.763 |
| 6 | ERR2598151 | fetal | fetal | 0.760 |
| 7 | SRR2774280 | — | — | 0.758 |
| 8 | BS_G5QBBHDV | low-grade glioma | — | 0.749 |
| 9 | SRR13311155 | — | — | 0.749 |
| 10 | GSM6454742 | — | D | 0.743 |