TCGA-F7-8298-01A-11R-2403-07
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- ANGIOGENESIS+0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.480
- E2F_TARGETS+0.420
- G2M_CHECKPOINT+0.400
- HYPOXIA+0.400
- MITOTIC_SPINDLE+0.290
- MYOGENESIS+0.280
- APICAL_SURFACE+0.270
- TNFA_SIGNALING_VIA_NFKB+0.260
- NOTCH_SIGNALING+0.240
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.510
- INTERFERON_ALPHA_RESPONSE-0.490
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.390
- FATTY_ACID_METABOLISM-0.360
- INTERFERON_GAMMA_RESPONSE-0.340
- PEROXISOME-0.250
- BILE_ACID_METABOLISM-0.230
- ADIPOGENESIS-0.210
- PANCREAS_BETA_CELLS-0.200
- XENOBIOTIC_METABOLISM-0.160
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | e040e6c8-34e5-44fb-a6f3-c247009fccfc | — | — | 0.870 |
| 2 | SRR27320698 | — | — | 0.830 |
| 3 | TCGA-D8-A27F-01A-11R-A16F-07 | — | E | 0.808 |
| 4 | DRR168609 | — | — | 0.782 |
| 5 | 21b172a2-72ce-4cfc-b021-cf8c36359feb | — | — | 0.782 |
| 6 | TCGA-CN-6022-01A-21R-1686-07 | — | — | 0.780 |
| 7 | TCGA-CV-6950-01A-11R-1915-07 | — | — | 0.779 |
| 8 | SRR8518404 | — | D | 0.779 |
| 9 | TCGA-85-A50M-01A-21R-A262-07 | — | cohortSQ1 | 0.767 |
| 10 | SRR12475162 | — | — | 0.762 |